Tutorials
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inbodb: How to retrieve data from the Meetnetten database
📦 R package vignette.
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inbodb: How to retrieve data from the Taxonlijsten database
📦 R package vignette.
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Handle Git conflicts via GitHub.Com
How to handle git conflicts using the GitHub website
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Tutorial Bayesian statistics with brms
This tutorial starts with a theoretical overview of bayesian statistics and the MCMC algorithm. Next, we fit, check, and analyse Bayesian models with …
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Using WFS services in R
How to use WFS (vectors/features) GIS services within R scripts
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Set up Zenodo - GitHub integration
How to configure Zenodo to publish each new release of a GitHub repository?
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Get species checklist data from GBIF with rgbif
How to use rgbif function `name_usage()` to get species checklist data from GBIF as well as some other rgbif tips.
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rgbif: Multiple values
📦 R package vignette.
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Git and GitHub Authentication on Windows
How to safely identify yourself, or a third party on behalf of you, to Git or GitHub
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Using WMS services in R
How to use WMS (raster) GIS services within R scripts
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checklist: Setting up the integration between GitHub, Zenodo and ORCID
📦 R package vignette.
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frictionless: Introduction to frictionless
📦 R package vignette.
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rgbif: Citing GBIF mediated data
📦 R package vignette.
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rgbif: Downloading occurrence data from GBIF
📦 R package vignette.
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rgbif: Downloading species lists from GBIF
📦 R package vignette.
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rgbif: Set up your GBIF username and password
📦 R package vignette.
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rgbif: Working with taxonomic names
📦 R package vignette.
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wateRinfo: Introduction to downloading time series data from waterinfo.be
📦 R package vignette.
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etn: Explore acoustic telemetry data
📦 R package vignette.
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Coordinate operations and maps in R
This tutorial shows how to do coordinate transformations and conversions in R. It also demonstrates how spatial data can be mapped with ggplot2 and …
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Citations in R Markdown
How to use Rstudio's citation tools to cite publications and create bibliographies
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Goodbye PROJ.4! How to specify a coordinate reference system in R?
Current good practice in specifying a CRS in R
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Updating the renv environment of an R project
Updating R and packages in an renv environment
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n2khab: Working with geospatial data sources of habitat (sub)types and RIBs
📦 R package vignette.
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checklist: Philosophy of the checklist package
📦 R package vignette.
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checklist: Setting up checklist
📦 R package vignette.
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(Down)load KNMI, KMI or MOW-HIC data using the inborutils package
Link to article in the inborutils package
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watina: Getting started with watina: connecting and selecting locations
📦 R package vignette.
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gwloggeR: Air pressure
📦 R package vignette.
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gwloggeR: Air pressure: drift
📦 R package vignette.
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gwloggeR: Hydrostatic pressure
📦 R package vignette.
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gwloggeR: Introduction to gwloggeR
📦 R package vignette.
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Use of INBO citation style with bibliography managers
We show where to find and how to use the INBO citation style in bibliography managers
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Tutorial setup_codingclub_session()
Tutorial on how to use setup_codingclub_session() to load data and scripts to use during coding clubs.
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Read data from Google sheets
Extracting data directly from Google spreadsheets
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How to use open raster file formats in R: GeoTIFF & GeoPackage
A simple tutorial to demonstrate the use of GeoTIFF and *.gpkg files in R
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Transforming spatial objects
Changing between coordinate reference systems with the R package sp
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inbodb: How to retrieve data from the INBOVEG database
📦 R package vignette.
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'Zoom in' on `ggplot2` figures
Learn the difference between zooming in with scales and coordinates.
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Mixed model formulation of a paired t-test
Learn some insights about mixed models based on a simple example
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Same variable in fixed and random effects
Learn what the effect is of having the same variable in the fixed and random part of a mixed model.
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Spatially correlated random effects with INLA
A quick and dirty illustration of how spatially correlated random effects can be fit with INLA
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Zero-inflation
Various ways in which zero-inflation can be detected and handled.
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Styleguide SQL-scripts
Layout guidelines for writing clear SQL-scripts
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effectclass: Standardised classification of effects based on their uncertainty
📦 R package vignette.
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n2khab: Demonstrating package & data setup and handling of sf objects: a case with read_soilmap()
📦 R package vignette.
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Styleguide new git repositories
Guidelines for structuring git repositories
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How to use open vector file formats in R: GeoPackage & GeoJSON
A simple tutorial to demonstrate the use of *.gpkg and *.geojson files in R
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Classification and visualisation of estimates and their uncertainty
Slides of a workshop around uncertainty
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effectclass: Visualising effects
📦 R package vignette.
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watina: Using hydrochemical data to characterize and select locations
📦 R package vignette.
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watina: Using XG3 values to characterize and select locations
📦 R package vignette.
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Match scientific names with the GBIF Backbone Taxonomy
How to use inborutils function gbif_species_name_match() to match a list of scientific names against the GBIF backbone taxonomy.
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n2khab: Where to store the N2KHAB input data sources
📦 R package vignette.
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inborutils: GBIF scientific name matching
📦 R package vignette.
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Database conventions (MS SQL Server)
These are INBO database conventions. This page is intended for those who design (MS SQL Server) databases for their project.
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How to make spatial joins (point in polygon)?
Various ways to make a spatial join between GIS point data and polygon data
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Applying the INBO corporate identity to bookdown documents
Slides, code and data used during the INBOmd workshop
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n2khab: Using the GRTS data sources
📦 R package vignette.
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bioRad: Introduction to bioRad
📦 R package vignette.
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n2khab: Reference lists and using them
📦 R package vignette.
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R voor beginners
Handleiding, code en data ter ondersteuning van de 'R voor beginners' workshop
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INLA workshops
Slides, code and data used during the INLA workshop
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Git(hub) introduction
INBO Git workshop and workflow
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inlatools: Checking the distribution and dispersion of a model
📦 R package vignette.
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inlatools: Getting a grasp on the random walk hyperparameter
📦 R package vignette.
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VMM surface waters - quality data
How to consult the INBO-copy of the VMM-database with physicochemical data and quality indices of surface waters
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inlatools: Setting a prior for the random intercept variance and fixed effects
📦 R package vignette.
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inborutils: (Down)load data from external partners
📦 R package vignette.
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INBOmd: Introduction to INBOmd
📦 R package vignette.
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Headers and navigation in R code
Provide structure inside an R script using sections
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Let's create an interactive map!
Creating interactive maps with leaflet
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Using `%>%` pipes in R
Using the %>% pipe functionality in R scripts
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Wercker
How to set up continuous integration for a package with Wercker
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Data wrangling with tidyverse
Some introductionary information about tidyverse
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inborutils: Check coordinate system
📦 R package vignette.
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wateRinfo: Define the date period to download
📦 R package vignette.
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wateRinfo: Download time series from multiple stations/variables
📦 R package vignette.
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Styleguide R code
This style guide is a recommendation for all R code written for the Research Institute for Nature and Forest (INBO). The goal of this style guide is …
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Undo a git commit
Undo git commits using the command line
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Git without internet
Git usage when working offline
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Git workflow using the command line
Git workflow using the command line
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Handle conflicts
How to handle git conflicts using command line
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Code coverage
Setting up code coverage
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Reading large data files in R
Handling large text files in R
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Read data from INBO databases (SQL Server) with R
Database access using R